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Higher rates of nitrogen fertilization decrease soil enzyme activities, microbial functional diversity and nitrification capacity in a Chinese polytunnel greenhouse vegetable land
Authors:Weishou Shen  Xiangui Lin  Weiming Shi  Ju Min  Nan Gao  Huayong Zhang  Rui Yin  Xinhua He
Institution:1. Department of Biological Sciences, California State University, East Bay, 25800 Carlos Bee Blvd., Hayward, CA, 94542, USA
2. Department of Statistics, California State University, East Bay, Hayward, CA, 94542, USA
3. Department of Chemistry & Biochemistry, California State University, East Bay, Hayward, CA, 94542, USA
4. Department of Agronomy and Plant Genetics, University of Minnesota, St Paul, MN, 55108, USA
5. Department of Soil, Water, and Climate, University of Minnesota, 1991 Upper Buford Circle, St Paul, MN, 55108, USA
6. USDA-ARS, Plant Science Research Unit, 1991 Upper Buford Circle, St Paul, MN, 55108, USA
Abstract:White lupin (Lupinus albus L.) is considered a model system for understanding plant acclimation to nutrient deficiency. It acclimates to phosphorus (P) and iron (Fe) deficiency by the development of short, densely clustered lateral roots called proteoid (or cluster) roots; proteoid-root development is further influenced by nitrogen (N) supply. In an effort to better understand proteoid root function under various nutrient deficiencies, we used nylon filter arrays to analyze 2,102 expressed sequence tags (ESTs) from proteoid roots of P-deficient white lupin. These have been previously analyzed for up-regulation in ?P proteoid roots, and were here analyzed for up-regulation in proteoid roots of N-deprived plants. We identified a total of 19 genes that displayed up-regulation in proteoid roots under both P and N deprivation. One of these genes showed homology to putative formamidases. The corresponding open reading frame was cloned, overexpressed in E. coli, and the encoded protein was purified; functional characterization of the recombinant protein confirmed formamidase activity. Though many homologues of bacterial and fungal formamidases have been identified in plants, to our knowledge, this is the first report of a functional characterization of a plant formamidase.
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