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Evolution and functional divergence of monocarboxylate transporter genes in vertebrates
Authors:Liu Qingpo  Dou Shijuan  Wang Guang'en  Li Zhimin  Feng Ying
Institution:School of Agricultural and Food Science, Zhejiang Forestry University, Lin'an, Hangzhou 311300, China.
Abstract:Monocarboxylate transporters (MCTs) form a gene family with an ancient past. The identification of MCTs (MCHs) from bacteria, protozoa, fungi, invertebrates, as well as vertebrates, but not from plants and virus, allowed illuminating the phylogenetic and evolutionary history of this gene family. The significant expansion of vertebrate MCT genes should have primarily occurred after the divergence of vertebrates and invertebrates, but before the divergence time between ray-finned fish and mammals. The divergence of insect MCTs should have at least occurred in the common ancestor of fruit fly, beetle, and honeybee. Fungi monocarboxylate transporter homologues (MCHs) might evolve independently from an ancient ancestor. The results of functional divergence analysis provided statistical evidences for shifted evolutionary rate and/or changes of amino acid property after gene duplication. The sliding window analysis of the d(N)/d(S) ratio values showed that strong functional constraints must impose on the N- and C-terminal domains of vertebrate MCTs. These corresponding regions may play crucial roles for functionality of MCT proteins.
Keywords:dN/dS  the ratio of nonsynonymous-to-synonymous substitutions  EST  expressed sequence tag  FDA  functional divergence analysis  LRT  likelihood ratio statistic  MCH  monocarboxylate transporter homologue  MCT  monocarboxylate transporter  ME  minimal evolution  ML  maximum likelihood  MP  maximum parsimony  MRCA  most recent common ancestor  mya  million years ago  NCBI  National Center for Biotechnology Information  NJ  neighbor joining  Qk  posterior probability  SCFA  short-chain fatty acids  θ  coefficient of type-I or type-II functional divergence  TM  transmembrane region  WGD  whole genome duplication  
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