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Deep learning representations to support COVID-19 diagnosis on CT slices
Authors:Josu Ruano  John Arcila  David Romo-Bucheli  Carlos Vargas  Jefferson Rodríguez   scar Mendoza  Miguel Plazas  Lola Bautista  Jorge Villamizar  Gabriel Pedraza  Alejandra Moreno  Diana Valenzuela  Lina Vsquez  Carolina Valenzuela-Santos  Paúl Camacho  Daniel Mantilla  Fabio Martínez
Abstract:Introduction: The coronavirus disease 2019 (COVID-19) has become a significant public health problem worldwide. In this context, CT-scan automatic analysis has emerged as a COVID-19 complementary diagnosis tool allowing for radiological finding characterization, patient categorization, and disease follow-up. However, this analysis depends on the radiologist’s expertise, which may result in subjective evaluations.Objective: To explore deep learning representations, trained from thoracic CT-slices, to automatically distinguish COVID-19 disease from control samples.Materials and methods: Two datasets were used: SARS-CoV-2 CT Scan (Set-1) and FOSCAL clinic’s dataset (Set-2). The deep representations took advantage of supervised learning models previously trained on the natural image domain, which were adjusted following a transfer learning scheme. The deep classification was carried out: (a) via an end-to-end deep learning approach and (b) via random forest and support vector machine classifiers by feeding the deep representation embedding vectors into these classifiers.Results: The end-to-end classification achieved an average accuracy of 92.33% (89.70% precision) for Set-1 and 96.99% (96.62% precision) for Set-2. The deep feature embedding with a support vector machine achieved an average accuracy of 91.40% (95.77% precision) and 96.00% (94.74% precision) for Set-1 and Set-2, respectively.Conclusion: Deep representations have achieved outstanding performance in the identification of COVID-19 cases on CT scans demonstrating good characterization of the COVID-19 radiological patterns. These representations could potentially support the COVID-19 diagnosis in clinical settings.
Keywords:Coronavirus infections/diagnosis  tomography  X-ray computed  deep learning
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