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Non-cognizable ribonucleotide, 2′AMP, binds to a mutant ribonuclease T1 (Y45W) at a new base-binding site but not at the guanine-recognition site
Authors:Toshio Hakoshima  Takeshi Itoh  Keigo Gohda  Ken-ichi Tomita  Sei-ichi Uesugi  Satoshi Nishikawa  Hiroshi Morioka  Eiko Ohtsuka  Morio Ikehara
Abstract:Complex of a mutant ribonuclease T1 (Y4SW) with a non-cognizable ribonucleotide, 2′AMP, has been determined and refined by X-ray diffraction at 1.7 Å resolution. The 2′AMP molecule locates at a new base-binding site which is remote from the guanine-recognition site, where 2′GMP was found to be bound. The nucleotide adopts the anti conformation of the glycosidic bond and C3′-exo sugar pucker. There exists a single hydrogen bond between the adenine base and the enzyme, and, therefore, the site found is apparently a non-specific binding site. The results indicate that the binding of 2′AMP to the guanine-recognition site is weaker than that to the new binding site.
Keywords:X-ray  Recognition  Non-specific binding  Mutant RNase T1
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