SEGID: identifying interesting segments in (multiple) sequence alignments |
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| Authors: | Wang Lusheng Xu Ying |
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| Affiliation: | Department of Computer Science, City University of Hong Kong, Kowloon, Hong Kong. cswangl@cityu.edu.hk |
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| Abstract: | SUMMARY: SEGID is a tool for finding conserved regions (regions of high scores) for a given (multiple) sequence alignment. It takes a (multiple) sequence alignment as its input and converts the alignment into a sequence of numbers, where each number is the alignment score of a column. Three algorithms are used to identify regions of high scores. A graphical interface is provided to present those identified regions. AVAILABILITY: Free from http://www.cs.cityu.edu.hk/~lwang/segid/subject to copyright restrictions. |
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