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Whole-genome analysis of Malawian Plasmodium falciparum isolates identifies possible targets of allele-specific immunity to clinical malaria
Authors:Zalak Shah  Myo T Naung  Kara A Moser  Matthew Adams  Andrea G Buchwald  Ankit Dwivedi  Amed Ouattara  Karl B Seydel  Don P Mathanga  Alyssa E Barry  David Serre  Miriam K Laufer  Joana C Silva  Shannon Takala-Harrison
Abstract:Individuals acquire immunity to clinical malaria after repeated Plasmodium falciparum infections. Immunity to disease is thought to reflect the acquisition of a repertoire of responses to multiple alleles in diverse parasite antigens. In previous studies, we identified polymorphic sites within individual antigens that are associated with parasite immune evasion by examining antigen allele dynamics in individuals followed longitudinally. Here we expand this approach by analyzing genome-wide polymorphisms using whole genome sequence data from 140 parasite isolates representing malaria cases from a longitudinal study in Malawi and identify 25 genes that encode possible targets of naturally acquired immunity that should be validated immunologically and further characterized for their potential as vaccine candidates.
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