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The Dysferlin C2A Domain Binds PI(4,5)P2 and Penetrates Membranes
Institution:1. Department of Biochemistry and Biophysics, Oregon State University, Corvallis, OR 97331, USA;2. NMR Facility, Oregon State University, Corvallis, OR 97331, USA;3. Department of Chemical Engineering, Oregon State University, Corvallis, OR 97331, USA;1. Department of Microbiology and Immunology, Center for Infectious Disease Research, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226, USA;2. Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226, USA;1. Faculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto 603-8555, Japan;2. Institute for Protein Dynamics, Kyoto Sangyo University, Japan;1. Laboratory of Cancer Cell Biology, Graduate School of Biostudies, Kyoto University, Kyoto 606-8501, Japan;2. Department of Genome Repair Dynamics, Radiation Biology Center, Graduate School of Biostudies, Kyoto University, Kyoto 606-8501, Japan;1. Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA;2. Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06511, USA;3. Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA;4. Department of Chemistry, Yale University, New Haven, CT 06511, USA;5. Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI 48109, USA
Abstract:Dysferlin is a large membrane protein found most prominently in striated muscle. Loss of dysferlin activity is associated with reduced exocytosis, abnormal intracellular Ca2+ and the muscle diseases limb-girdle muscular dystrophy and Miyoshi myopathy. The cytosolic region of dysferlin consists of seven C2 domains with mutations in the C2A domain at the N-terminus resulting in pathology. Despite the importance of Ca2+ and membrane binding activities of the C2A domain for dysferlin function, the mechanism of the domain remains poorly characterized. In this study we find that the C2A domain preferentially binds membranes containing PI(4,5)P2 through an interaction mediated by residues Y23, K32, K33, and R77 on the concave face of the domain. We also found that subsequent to membrane binding, the C2A domain inserts residues on the Ca2+ binding loops into the membrane. Analysis of solution NMR measurements indicate that the domain inhabits two distinct structural states, with Ca2+ shifting the population between states towards a more rigid structure with greater affinity for PI(4,5)P2. Based on our results, we propose a mechanism where Ca2+ converts C2A from a structurally dynamic, low PI(4,5)P2 affinity state to a high affinity state that targets dysferlin to PI(4,5)P2 enriched membranes through interaction with Tyr23, K32, K33, and R77. Binding also involves changes in lipid packing and insertion by the third Ca2+ binding loop of the C2 domain into the membrane, which would contribute to dysferlin function in exocytosis and Ca2+ regulation.
Keywords:calcium  dysferlin  C2 domain  CEST  genetic code expansion  dysferlin  MD"}  {"#name":"keyword"  "$":{"id":"k0045"}  "$$":[{"#name":"text"  "_":"molecular dynamics  PS"}  {"#name":"keyword"  "$":{"id":"k0055"}  "$$":[{"#name":"text"  "$$":[{"#name":"__text__"  "_":"1-palmitoyl-2-oleoyl-"}  {"#name":"italic"  "_":"sn"}  {"#name":"__text__"  "_":"-glycero-3-phosphoserine  PC"}  {"#name":"keyword"  "$":{"id":"k0065"}  "$$":[{"#name":"text"  "$$":[{"#name":"__text__"  "_":"1-palmitoyl-2-oleoyl-"}  {"#name":"italic"  "_":"sn"}  {"#name":"__text__"  "_":"-glycero-3-phosphocholine  PI(4  5)P2"}  {"#name":"keyword"  "$":{"id":"k0075"}  "$$":[{"#name":"text"  "_":"phosphatidylinositol bisphosphate  PE"}  {"#name":"keyword"  "$":{"id":"k0085"}  "$$":[{"#name":"text"  "$$":[{"#name":"__text__"  "_":"1-palmitoyl-2-oleoyl-"}  {"#name":"italic"  "_":"sn"}  {"#name":"__text__"  "_":"-glycero-3-phosphoethanolamin
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