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Cryo-EM Structure of the Full-length hnRNPA1 Amyloid Fibril
Affiliation:1. Institute of Protein Biochemistry, Ulm University, 89081 Ulm, Germany;2. Dr. Senckenberg Institute of Pathology, University Hospital Frankfurt, Frankfurt am Main, Germany;3. Core Unit Mass Spectrometry and Proteomics, Ulm University, 89081 Ulm, Germany;4. Department of Biochemistry and Molecular Biology, Thomas Jefferson University, Philadelphia, PA 19107, USA;5. Institute of Physics, University of Augsburg, 86159 Augsburg, Germany;6. Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA;1. Centro de Biología Molecular “Severo Ochoa” (CSIC-UAM), c/ Nicolás Cabrera 1, Campus de Cantoblanco-UAM, Madrid, Spain;2. Department of Theoretical Condensed Matter Physics, Universidad Autónoma de Madrid, Spain;3. Department of Biotechnology, Universidad Francisco de Vitoria, Pozuelo de Alarcón, Madrid, Spain;1. Department of Microbiology and Immunology, Center for Infectious Disease Research, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226, USA;2. Department of Biophysics, Medical College of Wisconsin, 8701 Watertown Plank Rd, Milwaukee, WI 53226, USA;1. Chair of Biopolymer Chemistry, Technical University of Munich, Freising, Germany;2. Institute for Biological Interfaces 4, Karlsruhe Institute of Technology, 76344 Eggenstein-Leopoldshafen, Germany;3. Institute of Organic Chemistry, Karlsruhe Institute of Technology, 76131 Karlsruhe, Germany
Abstract:Heterogeneous nuclear ribonucleoprotein A1 (hnRNPA1) is a multifunctional RNA-binding protein that is associated with neurodegenerative diseases, such as amyotrophic lateral sclerosis and multisystem proteinopathy. In this study, we have used cryo-electron microscopy to investigate the three-dimensional structure of amyloid fibrils from full-length hnRNPA1 protein. We find that the fibril core is formed by a 45-residue segment of the prion-like low-complexity domain of the protein, whereas the remaining parts of the protein (275 residues) form a fuzzy coat around the fibril core. The fibril consists of two fibril protein stacks that are arranged into a pseudo-21 screw symmetry. The ordered core harbors several of the positions that are known to be affected by disease-associated mutations, but does not encompass the most aggregation-prone segments of the protein. These data indicate that the structures of amyloid fibrils from full-length proteins may be more complex than anticipated by current theories on protein misfolding.
Keywords:amyloid fibril structure  amyloidosis  Cryo-electron microscopy  heterogeneous nuclear ribonuclear A1  protein misfolding  hnRNPA1"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0035"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Heterogeneous nuclear ribonucleoprotein A1  ALS"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0045"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Amyotrophic lateral sclerosis  FTLD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0055"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Frontotemporal lobar degeneration  MSP"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0065"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Multisystem proteinopathy  RRM"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0075"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  RNA recognition motif  LCD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0085"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Low-complexity domain  NLS"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0095"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Nuclear-localization signal sequence  Kapβ2"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0105"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Karyopherin-β2  SG"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0115"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Stress granule  WT"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0125"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Wildtype  cryo-EM"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0135"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  cryo-Electron microscopy  2D"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0145"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Two-dimensional  3D"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0155"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Three-dimensional  FSC"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0165"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Fourier shell correlation  TEM"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0175"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Transmission electron microscope  MD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0185"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Molecular dynamics  RMSF"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0195"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Root mean square fluctuation  RMSD"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0205"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Root mean square deviation  HEPES"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0215"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  40 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid  GST"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0225"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Glutathione S-transferase  TEV"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0235"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Tobacco etch virus  AB"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0245"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Assembly buffer  EMDB"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0255"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Electron microscopy data bank  PDB"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0265"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Protein data bank  T"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0275"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Temperature  N"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0285"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Particle number  V"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0295"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Volume  P"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0305"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Pressure  EMBL"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0315"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  European molecular biology laboratory  PK"  },{"  #name"  :"  keyword"  ,"  $"  :{"  id"  :"  k0325"  },"  $$"  :[{"  #name"  :"  text"  ,"  _"  :"  Proteinase K
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