Phytoplankton and zooplankton seasonal dynamics in a subtropical estuary: importance of cyanobacteria

A seasonal study of phytoplankton and zooplankton was conductedfrom 1999 to 2001 in Pensacola Bay, Florida, USA, to furtherthe understanding of pelagic food webs in sub-tropical estuaries.Monthly measurements included size-fractionated chlorophyll(whole water, <5 µm, <20 µm), net- and picophytoplanktoncomposition analyzed using microscopy, flow cytometry, and HPLCpigment analysis. Additionally, zooplankton abundance and dryweight were determined from net tows. The results show a phytoplanktoncommunity dominated by the small size fraction (<5 µm),especially during the warm periods. The <5 µm chlorophyllfraction was strongly correlated with cyanobacterial abundanceand zeaxanthin. Cyanobacteria (cf. Synechococcus) abundancepeaked during summer in the upper estuary, typically exceeding3 x 10⁹ L^-1, and was strongly correlated with temperature. Cyanobacteriaabundance at the freshwater end of the Bay (in the EscambiaRiver) was very low, suggesting that cyanobacteria were notdelivered via freshwater. Two pigmentation types of cyanobacteriawere observed. Phycoerythrin-containing cells (PE-rich) weremore abundant at the marine end, while phycocyanin-containingcells (PC-rich) were more abundant in the upper estuary. Thelarger algae (>5–10 µm) were predominantly composedof diatoms, followed by chlorophytes, cryptophytes and dinoflagellates.The three most abundant genera of diatoms were Thalassiosira,Pennales and Cyclotella. Zooplankton biomass averaged 12.2 µgC L^-1, with peak biomass occurring during May (