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Merging computational fluid dynamics and 4D Flow MRI using proper orthogonal decomposition and ridge regression
Institution:1. Division of Cardiovascular Medicine, Department of Medical and Health Sciences, Linköping University, Linköping, Sweden;2. Center for Medical Image Science and Visualization (CMIV), Linköping University, Linköping, Sweden;3. Division of Media and Information Technology, Department of Science and Technology/Swedish e-Science Research Centre (SeRC), Linköping University, Linköping, Sweden;4. Department of Cardiovascular Surgery, Linköping University Hospital, County Council of Östergötland, Linköping, Sweden;1. Radiology and Biomedical Imaging, University of California San Francisco, San Francisco, CA, United States;2. Division of Cardiovascular Medicine, Department of Medical and Health Sciences, Linköping University, Linköping, Sweden;3. Center for Medical Image Science and Visualization (CMIV), Linköping University, Linköping, Sweden;4. Radiology Service, VA Medical Center, San Francisco, CA, United States
Abstract:Time resolved phase-contrast magnetic resonance imaging 4D-PCMR (also called 4D Flow MRI) data while capable of non-invasively measuring blood velocities, can be affected by acquisition noise, flow artifacts, and resolution limits. In this paper, we present a novel method for merging 4D Flow MRI with computational fluid dynamics (CFD) to address these limitations and to reconstruct de-noised, divergence-free high-resolution flow-fields. Proper orthogonal decomposition (POD) is used to construct the orthonormal basis of the local sampling of the space of all possible solutions to the flow equations both at the low-resolution level of the 4D Flow MRI grid and the high-level resolution of the CFD mesh. Low-resolution, de-noised flow is obtained by projecting in vivo 4D Flow MRI data onto the low-resolution basis vectors. Ridge regression is then used to reconstruct high-resolution de-noised divergence-free solution. The effects of 4D Flow MRI grid resolution, and noise levels on the resulting velocity fields are further investigated. A numerical phantom of the flow through a cerebral aneurysm was used to compare the results obtained using the POD method with those obtained with the state-of-the-art de-noising methods. At the 4D Flow MRI grid resolution, the POD method was shown to preserve the small flow structures better than the other methods, while eliminating noise. Furthermore, the method was shown to successfully reconstruct details at the CFD mesh resolution not discernible at the 4D Flow MRI grid resolution. This method will improve the accuracy of the clinically relevant flow-derived parameters, such as pressure gradients and wall shear stresses, computed from in vivo 4D Flow MRI data.
Keywords:4D-PCMR  4D Flow MRI  Flow reconstruction  POD  Proper orthogonal decomposition  Computational fluid dynamic
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