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Challenging AQP4 druggability for NMO-IgG antibody binding using molecular dynamics and molecular interaction fields
Institution:1. Dipartimento di Farmacia — Scienze del Farmaco, Via Orabona, 4, Università di Bari “Aldo Moro”, Bari, Italy;2. Dipartimento Interateneo di Fisica “M. Merlin”, Università di Bari “Aldo Moro” and INFN, Via E. Orabona, 4, I-70126 Bari, Italy;3. Centro Ricerche TIRES, University of Bari “Aldo Moro”, Via Amendola 173, I-70126 Bari, Italy;4. Molecular Discovery Limited, 215 Marsh Road, Pinner, Middlesex, London HA5 5NE, UK;5. Department of Chemistry, Biology and Biotechnology, University of Perugia, 06123 Perugia, Italy
Abstract:Neuromyelitis optica (NMO) is a multiple sclerosis-like immunopathology disease affecting optic nerves and the spinal cord. Its pathological hallmark is the deposition of a typical immunoglobulin, called NMO-IgG, against the water channel Aquaporin-4 (AQP4). Preventing NMO-IgG binding would represent a valuable molecular strategy for a focused NMO therapy. The recent observation that aspartate in position 69 (D69) is determinant for the formation of NMO-IgG epitopes prompted us to carry out intensive Molecular Dynamics (MD) studies on a number of single-point AQP4 mutants. Here, we report a domino effect originating from the point mutation at position 69: we find that the side chain of T62 is reoriented far from its expected position leaning on the lumen of the pore. More importantly, the strength of the H-bond interaction between L53 and T56, at the basis of the loop A, is substantially weakened. These events represent important pieces of a clear-cut mechanistic rationale behind the failure of the NMO-IgG binding, while the water channel function as well as the propensity to aggregate into OAPs remains unaltered. The molecular interaction fields (MIF)-based analysis of cavities complemented MD findings indicating a putative binding site comprising the same residues determining epitope reorganization. In this respect, docking studies unveiled an intriguing perspective to address the future design of small drug-like compounds against NMO. In agreement with recent experimental observations, the present study is the first computational attempt to elucidate NMO-IgG binding at the molecular level, as well as a first effort toward a less elusive AQP4 druggability.
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