Structural and physiological relationships in blood clotting proteins: thrombin and prothrombin

Structural aspects of the behaviour of prothrombin and its fragments have been examined by circulae dichroism spectroscopy. It has been noted that a correlation exists between the ellipticity of the aromatic bands and the physiological activity of partially denatured and abnormal prothrombins. The origin of these bands appears to be predominantly based in the region of one or more tyrosine residues. It is shown that whereas complexation of calcium with prothrombin causes little change in the dromatic c.d. spectrum, the effect on prothrombin fragment 1 is quite dramatic. It is concluded that the binding of calcium to the dicarboxyglutamate residues in fragment 1 causes a concomitant ionization of one or more tyrosine residues. The behaviour of fragment 1 is indicative of an intact protein with a tertiary structure which supports our previous trimodular model of prothrombin, which is activated in part by the unlocking of an ‘ionic’ lock. This lock consists of the highly negatively charged dicarboxyglutamyl patch at or near the N terminus of prothrombin and a positively charged basic patch near the C terminus.