首页 | 本学科首页   官方微博 | 高级检索  
   检索      


The complete mitogenome of Apocheima cinerarius (Lepidoptera: Geometridae: Ennominae) and comparison with that of other lepidopteran insects
Authors:Shuxian Liu  Dayong Xue  Rui Cheng  Hongxiang Han
Institution:1. Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China;2. University of the Chinese Academy of Sciences, Beijing 100049, China
Abstract:The complete mitochondrial genome (mitogenome) of a female flightless geometrid moth Apocheima cinerarius was found to be 15,722 bp in length, containing 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, 2 ribosomal RNA (rRNA) genes, and a control region. The A + T content of the complete mitogenome is 80.83%. The AT skew value (A − T] / A + T]) is 0.027. The 13 PCGs of the mitogenome start with typical ATN codons, except for cox1 with the start codon CGA. All the tRNA genes have typical cloverleaf secondary structures, except for trnSer(AGN). The secondary structures of rrnL and rrnS were predicted. Six structural domains including conserved regions (IV, V) and variable regions (I, II, III, VI) were identified in the secondary structure of rrnL. The secondary structure of rrnS consists of 3 structural domains. The control region of A. cinerarius begins with conserved motifs of “ATAGA” + 19-bp poly T. It also contains a microsatellite-like (TA)26, a stem-and-loop structure, and a poly-A stretch. Phylogenetic analysis showed that Geometroidea is more closely related to Bombycoidea than to Noctuoidea. A. cinerarius is more closely related to Biston panterinaria than to Phthonandria atrilineata, which is in accordance with the conventional morphology-based classification.
Keywords:Mitogenome  mitochondrial genome  PCGs  protein coding genes  atp6 and atp8  atp synthase subunit 6 and 8 genes  cox1-3  cytochrome c oxidase 1&ndash  3 genes  cytb  cytochrome b gene  nad1-6 and nad4L  NADH dehydrogenase subunit 1&ndash  6 and 4L genes  rRNA  ribosomal RNA  rrnL and rrnS  large and small subunit ribosomal RNA  tRNA  transfer RNA  PCR  polymerase chain reaction  AIC  Akaike information criterion
本文献已被 ScienceDirect 等数据库收录!
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号