Transcriptome analysis of grain-filling caryopses reveals the potential formation mechanism of the rice sugary mutant |
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| Authors: | Feng-peng Li Min-Young Yoon Gang Li Won-Hee Ra Jae-Wan Park Soon-Jae Kwon Soon-Wook Kwon Il-Pyung Ahn Yong-Jin Park |
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| Affiliation: | 1. Department of Plant Resources, College of Industrial Sciences, Kongju National University, Yesan 340-702, Republic of Korea;2. Advanced Radiation Technology Institute, Atomic Energy Research Institute, Jeongeup 580-185, Republic of Korea;3. Department of Plant Bioscience, College of Natural Resources and Life Science, Pusan National University, Milyang 627-706, Republic of Korea;4. National Academy of Agricultural Science, Rural Development Administration, Suwon 441-107, Republic of Korea |
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| Abstract: | |
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| Keywords: | RNA-Seq, RNA sequencing FDR, false discovery rate DAF, day after flowering DEGs, differentially expressed genes OsAGPS, Oryza sativa ADP-glucose pyrophosphorylase small subunit OsAGPL, Oryza sativa ADP-glucose pyrophosphorylase large subunit AGPase, ADP glucose pyrophosphorylase GBSS, granule-bound starch synthase SS, starch synthase SBE, starch branching enzyme DBE, debranching enzyme DPE, disproportionating enzyme PHO, phosphorylase ISA1, isoamylase I SAGE, serial analysis of gene expression qRT-PCR, quantitative real-time PCR DP, degree of polymerization RPKM, reads per kb per million reads FC, fold change SSRGs, synthesis starch-related genes GO, gene ontology KEGG, Kyoto Encyclopedia of Genes and Genomes eEF1a, eukaryotic elongation factor 1-alpha bt2, Brittle2 sh2, Shrunken PPDK, Pyruvate orthophosphate dikinase SAGE, Serial analysis of gene expression |
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