Bio3d: an R package for the comparative analysis of protein structures |
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| Authors: | Grant Barry J Rodrigues Ana P C ElSawy Karim M McCammon J Andrew Caves Leo S D |
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| Institution: | Department of Chemistry and Biochemistry, University of California, San Diego La Jolla, CA 92093, USA. bgrant@mccammon.ucsd.edu |
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| Abstract: | An automated procedure for the analysis of homologous protein structures has been developed. The method facilitates the characterization of internal conformational differences and inter-conformer relationships and provides a framework for the analysis of protein structural evolution. The method is implemented in bio3d, an R package for the exploratory analysis of structure and sequence data. AVAILABILITY: The bio3d package is distributed with full source code as a platform-independent R package under a GPL2 license from: http://mccammon.ucsd.edu/~bgrant/bio3d/ |
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