Proteogenomic Analysis of Breast Cancer Transcriptomic and Proteomic Data,Using De Novo Transcript Assembly: Genome-Wide Identification of Novel Peptides and Clinical Implications |
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| Authors: | P.S. Hari Lavanya Balakrishnan Chaithanya Kotyada Arivusudar Everad John Shivani Tiwary Nameeta Shah Ravi Sirdeshmukh |
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| Affiliation: | 1. Mazumdar Shaw Center for Translational Research, Narayana Health, Bangalore, India;2. Simulation and Modeling Sciences, Pfizer Pharma GmBH, Berlin, Germany;3. Institute of Bioinformatics, International Tech Park, Bangalore, India;4. Health Sciences, Manipal Academy of Higher Education, Manipal, India |
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| Abstract: | |
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| Keywords: | proteogenomics breast cancer alternative splicing CPTAC ALDOA" },{" #name" :" keyword" ," $" :{" id" :" kwrd0040" }," $$" :[{" #name" :" text" ," _" :" aldolase A BRCA" },{" #name" :" keyword" ," $" :{" id" :" kwrd0050" }," $$" :[{" #name" :" text" ," _" :" breast cancer CPTAC" },{" #name" :" keyword" ," $" :{" id" :" kwrd0060" }," $$" :[{" #name" :" text" ," _" :" The Clinical Proteomic Tumor Analysis Consortium CXCL16" },{" #name" :" keyword" ," $" :{" id" :" kwrd0070" }," $$" :[{" #name" :" text" ," _" :" C-X-C motif chemokine ligand 16 FADD" },{" #name" :" keyword" ," $" :{" id" :" kwrd0080" }," $$" :[{" #name" :" text" ," _" :" Fas-associated death domain FGFR" },{" #name" :" keyword" ," $" :{" id" :" kwrd0090" }," $$" :[{" #name" :" text" ," _" :" fibroblast growth factor receptor FLT1" },{" #name" :" keyword" ," $" :{" id" :" kwrd0100" }," $$" :[{" #name" :" text" ," _" :" Fms-related receptor tyrosine kinase 1 HER2" },{" #name" :" keyword" ," $" :{" id" :" kwrd0110" }," $$" :[{" #name" :" text" ," _" :" human epidermal growth factor receptor 2 iTRAQ" },{" #name" :" keyword" ," $" :{" id" :" kwrd0120" }," $$" :[{" #name" :" text" ," _" :" isobaric tag for relative and absolute quantitation lncRNA" },{" #name" :" keyword" ," $" :{" id" :" kwrd0130" }," $$" :[{" #name" :" text" ," _" :" long noncoding RNA MS" },{" #name" :" keyword" ," $" :{" id" :" kwrd0140" }," $$" :[{" #name" :" text" ," _" :" mass spectrometry nORF" },{" #name" :" keyword" ," $" :{" id" :" kwrd0150" }," $$" :[{" #name" :" text" ," _" :" novel ORF PLCB3" },{" #name" :" keyword" ," $" :{" id" :" kwrd0160" }," $$" :[{" #name" :" text" ," _" :" phospholipase C beta 3 PPP2R2A" },{" #name" :" keyword" ," $" :{" id" :" kwrd0170" }," $$" :[{" #name" :" text" ," _" :" protein phosphatase 2 regulatory subunit B alpha PSM" },{" #name" :" keyword" ," $" :{" id" :" kwrd0180" }," $$" :[{" #name" :" text" ," _" :" peptide-spectrum match RPA1" },{" #name" :" keyword" ," $" :{" id" :" kwrd0190" }," $$" :[{" #name" :" text" ," _" :" replication protein A1 sORF" },{" #name" :" keyword" ," $" :{" id" :" kwrd0200" }," $$" :[{" #name" :" text" ," _" :" small ORF TCGA" },{" #name" :" keyword" ," $" :{" id" :" kwrd0210" }," $$" :[{" #name" :" text" ," _" :" The Cancer Genome Atlas |
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