Novel quantitative trait loci for broad-based resistance to soybean cyst nematode (Heterodera glycines Ichinohe) in soybean PI 567516C |
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Authors: | Tri D Vuong David A Sleper James G Shannon Henry T Nguyen |
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Institution: | (1) Division of Plant Sciences, National Center for Soybean Biotechnology (NCSB), University of Missouri-Columbia, Columbia, MO 65211, USA;(2) Division of Plant Sciences, NCSB, Delta Center, University of Missouri-Columbia, P.O. Box 160, Portageville, MO 63873, USA |
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Abstract: | Soybean cyst nematode (SCN, Heterodera glycines Ichinohe) is the most destructive pest of soybean worldwide. Host plant resistance is an effective approach to control this
pest. Plant introduction PI 567516C has been reported to be highly resistant to multiple-HG types of SCN. The objectives of
this study were to identify and map novel quantitative trait loci (QTL) for SCN resistance to six HG types (also known as
races 1, 2, 3, 5, 14, and LY1). Mapping was conducted using 250 F2:3 progeny derived from a Magellan (susceptible) × PI 567516C (resistant) cross. F6:7 recombinant inbred lines (RILs) developed from the F2:3 progeny were employed to confirm the putative QTL identified. A total of 927 polymorphic simple sequence repeats (SSR) and
single nucleotide polymorphism (SNP) markers were genotyped. Following the genetic linkage analysis, permutation tests and
composite interval mapping were performed to identify and map QTL. Four QTL were associated with resistance to either multiple-
or single-SCN HG types. Two QTL for resistance to multiple-SCN HG types were mapped to Chromosomes 10 and 18 and have not
been reported in other SCN resistance sources. New QTL were confirmed by analysis of 250 F6:7 RILs from the same population. SSR and SNP markers closely associated with these QTL can be useful for the development of
near-isogenic lines for fine-mapping and positional cloning of candidate genes for SCN resistance. |
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