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Crystal structure of a conserved hypothetical protein from Escherichia coli
Authors:Shin  Dong Hae  Yokota   Hisao  Kim   Rosalind  Kim   Sung-Hou
Affiliation:(1) Department of Chemistry, University of California, Berkeley, California 94720-5230, USA;(2) Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
Abstract:The crystal structure of a conserved hypothetical protein from Escherichia coli has been determined using X-ray crystallography. The protein belongs to the Cluster of Orthologous Group COG1553 (National Center for Biotechnology Information database, NLM, NIH), for which there was no structural information available until now. Structural homology search with DALI algorism indicated that this protein has a new fold with no obvious similarity to those of other proteins with known three-dimensional structures. The protein quaternary structure consists of a dimer of trimers, which makes a characteristic cylinder shape. There is a large closed cavity with approximate dimensions of 16 Å × 16 Å × 20 Å in the center of the hexameric structure. Six putative active sites are positioned along the equatorial surface of the hexamer. There are several highly conserved residues including two possible functional cysteines in the putative active site. The possible molecular function of the protein is discussed.
Keywords:hypothetical protein  structural genomics  crystal structure  new fold  conserved cysteine
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