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Exploration of the internal cavity of histone deacetylase (HDAC) with selective HDAC1/HDAC2 inhibitors (SHI-1:2)
Authors:Methot Joey L  Chakravarty Prasun K  Chenard Melissa  Close Joshua  Cruz Jonathan C  Dahlberg William K  Fleming Judith  Hamblett Christopher L  Hamill Julie E  Harrington Paul  Harsch Andreas  Heidebrecht Richard  Hughes Bethany  Jung Joon  Kenific Candia M  Kral Astrid M  Meinke Peter T  Middleton Richard E  Ozerova Nicole  Sloman David L  Stanton Matthew G  Szewczak Alexander A  Tyagarajan Sriram  Witter David J  Secrist J Paul  Miller Thomas A
Affiliation:Department of Drug Design and Optimization, Merck Research Laboratories, 33 Avenue Louis Pasteur, Boston, MA 02115, USA. joey_methot@merck.com
Abstract:We report herein the initial exploration of novel selective HDAC1/HDAC2 inhibitors (SHI-1:2). Optimized SHI-1:2 structures exhibit enhanced intrinsic activity against HDAC1 and HDAC2, and are greater than 100-fold selective versus other HDACs, including HDAC3. Based on the SAR of these agents and our current understanding of the HDAC active site, we postulate that the SHI-1:2 extend the existing HDAC inhibitor pharmacophore to include an internal binding domain.
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