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Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator

Authors:	Alexander?Garcia Castro Samuel?Thoraval Leyla?J?Garcia Email author" target="_blank">Mark?A?Ragan Email author

Institution:	(1) Institute for Molecular Bioscience, The University of Queensland, Brisbane, Qld, 4072, Australia;(2) Australian Research Council (ARC) Centre in Bioinformatics, St Lucia, Australia;(3) LIBROPHYT, Bioinformatique, Centre de Cadarache, Btiment 185, DEVM, 13108 St Paul-Lez-Durance, France;(4) Universidad de la Sabana, Bogota, Colombia

Abstract:	Background Computational methods for problem solving need to interleave information access and algorithm execution in a problem-specific workflow. The structures of these workflows are defined by a scaffold of syntactic, semantic and algebraic objects capable of representing them. Despite the proliferation of GUIs (Graphic User Interfaces) in bioinformatics, only some of them provide workflow capabilities; surprisingly, no meta-analysis of workflow operators and components in bioinformatics has been reported.

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