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Mutations in glucokinase and other genes detected in neonatal and type 1B diabetes patient using whole exome sequencing may lead to disease-causing changes in protein activity
Authors:Dao-Chen Lin  Chi-Yu Huang  Wei-Hsin Ting  Fu-Sung Lo  Chiung-Ling Lin  Horng-Woei Yang  Tzu-Yang Chang  Chao-Hsu Lin  Yao-Wei Tzeng  Wan-Syuan Yang  Yue-Li Juang  Yann-Jinn Lee
Institution:1. Division of Endocrinology and Metabolism, Department of Medicine, Taipei Veterans General Hospital, Taipei City 11217, Taiwan;2. Department of Radiology, Taipei Veterans General Hospital, Taipei City 11217, Taiwan;3. Institute of Biomedical Sciences, Mackay Medical College, New Taipei City 25245, Taiwan;4. Department of Pediatric Endocrinology, Mackay Children''s Hospital, Taipei City 10449, Taiwan;5. Mackay Junior College of Medicine, Nursing, and Management, Taipei City 11260, Taiwan;6. Department of Medicine, Mackay Medical College, New Taipei City 25245, Taiwan;7. Department of Pediatrics, Chang Gung Memorial Hospital, Taoyuan City 33305, Taiwan;8. College of Medicine, Chang Gung University, Taoyuan City 33302, Taiwan;9. Department of Medical Research, Mackay Memorial Hospital, Tamsui Branch, New Taipei City 25160, Taiwan;10. Department of Pediatrics, Mackay Memorial Hospital, Hsinchu Branch, Hsinchu City 30071, Taiwan;11. Department of Pediatrics, School of Medicine, College of Medicine, Taipei Medical University, Taipei City 11031, Taiwan
Abstract:Monogenic diabetes is caused by mutations that reduce β-cell function. While Sanger sequencing is the standard method used to detect mutated genes. Next-generation sequencing techniques, such as whole exome sequencing (WES), can be used to find multiple gene mutations in one assay. We used WES to detect genetic mutations in both permanent neonatal (PND) and type 1B diabetes (T1BD).A total of five PND and nine T1BD patients were enrolled in this study. WES variants were assessed using VarioWatch, excluding those identified previously. Sanger sequencing was used to confirm the mutations, and their pathogenicity was established via the literature or bioinformatic/functional analysis. The PND and T1BD patients were diagnosed at 0.1–0.5 and 0.8–2.7?years of age, respectively. Diabetic ketoacidosis was present at diagnosis in 60% of PND patients and 44.4% of T1BD patients. We found five novel mutations in five different genes. Notably, patient 602 had a novel homozygous missense mutation c.1295C?>?A (T432?K) in the glucokinase (GCK) gene. Compared to the wild-type recombinant protein, the mutant protein had significantly lower enzymatic activity (2.5%, p?=?0.0002) and Vmax (1.23?±?0.019 vs. 0.33?±?0.016, respectively; p?=?0.005). WES is a robust technique that can be used to unravel the etiologies of genetically heterogeneous forms of diabetes. Homozygous inactivating mutations of the GCK gene may have a significant role in PND pathogenesis.
Keywords:ND  neonatal diabetes  PND  permanent neonatal diabetes  T1BD  type 1B diabetes  WES  whole exome sequencing  Monogenic diabetes  Neonatal diabetes  Whole exome sequencing  Glucokinase
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