A toolkit for analysing large-scale plant small RNA datasets |
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| Authors: | Moxon Simon Schwach Frank Dalmay Tamas Maclean Dan Studholme David J Moulton Vincent |
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| Affiliation: | School of Computing Sciences, School of Biological Sciences, University of East Anglia, Norwich NR47TJ, UK. |
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| Abstract: | Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci. AVAILABILITY: The tools are freely available for use at http://srna-tools.cmp.uea.ac.uk. |
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