Interactive visualization software for exploring phylogenetic trees and clades |
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Authors: | Derthick Mark |
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Affiliation: | Human-Computer Interaction Institute, Carnegie Mellon University, Pittsburgh, PA, 15213, USA |
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Abstract: | Summary: The Summary Tree Explorer (STE) is a Java applicationfor interactively exploring sets of phylogenetic trees usingtwo coupled representations: a node-and-link diagram and a textuallist of common clades. Selection, pruning, filtering or re-rootingin one representation is immediately reflected in the other.While summary trees are more effective at showing the relationshipamong clades, they can only show a consistent subset of thosethat appear in the textual list. Working with both representationsmitigates the disadvantages of having to choose just one. Availability: STE, along with several sample datasets, is availableat http://cityscape.inf.cs.cmu.edu/phylogeny/ Contact: mad{at}cs.cmu.edu Associate Editor: Martin Bishop |
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