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Genome walking by Klenow polymerase
Authors:Mariateresa Volpicella  Claudia Leoni  Immacolata Fanizza  Sebastian Rius  Raffaele Gallerani  Luigi R. Ceci
Affiliation:1. Department of Biosciences, Biotechnologies, and Pharmacological Sciences, University of Bari, 70126 Bari, Italy;2. Centro de Estudios Fotosintéticos y Bioquímicos (CEFOBI, CONICET), Rosario 2000, Argentina;3. Institute of Biomembranes and Bioenergetics – CNR, 70126 Bari, Italy
Abstract:Genome walking procedures are all based on a final polymerase chain reaction amplification, regardless of the strategy employed for the synthesis of the substrate molecule. Here we report a modification of an already established genome walking strategy in which a single-strand DNA substrate is obtained by primer extension driven by Klenow polymerase and which results suitable for the direct sequencing of complex eukaryotic genomes. The efficacy of the method is demonstrated by the identification of nucleotide sequences in the case of two gene families (chiA and P1) in the genomes of several maize species.
Keywords:Genome walking   Klenow enzyme   Maize   Endochitinase A gene   P1 gene
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