首页 | 本学科首页   官方微博 | 高级检索  
     


Characterizing DNA preservation in degraded specimens of Amara alpina (Carabidae: Coleoptera)
Authors:Peter D. Heintzman  Scott A. Elias  Karen Moore  Konrad Paszkiewicz  Ian Barnes
Affiliation:1. School of Biological Sciences, Royal Holloway University of London, , Egham, TW20 0EX UK;2. Department of Geography, Royal Holloway University of London, , Egham, TW20 0EX UK;3. Exeter Sequencing Service, Biosciences, College of Life & Environmental Sciences, University of Exeter, , Exeter, EX4 4QD UK
Abstract:DNA preserved in degraded beetle (Coleoptera) specimens, including those derived from dry‐stored museum and ancient permafrost‐preserved environments, could provide a valuable resource for researchers interested in species and population histories over timescales from decades to millenia. However, the potential of these samples as genetic resources is currently unassessed. Here, using Sanger and Illumina shotgun sequence data, we explored DNA preservation in specimens of the ground beetle Amara alpina, from both museum and ancient environments. Nearly all museum specimens had amplifiable DNA, with the maximum amplifiable fragment length decreasing with age. Amplification of DNA was only possible in 45% of ancient specimens. Preserved mitochondrial DNA fragments were significantly longer than those of nuclear DNA in both museum and ancient specimens. Metagenomic characterization of extracted DNA demonstrated that parasite‐derived sequences, including Wolbachia and Spiroplasma, are recoverable from museum beetle specimens. Ancient DNA extracts contained beetle DNA in amounts comparable to museum specimens. Overall, our data demonstrate that there is great potential for both museum and ancient specimens of beetles in future genetic studies, and we see no reason why this would not be the case for other orders of insect.
Keywords:ancient DNA  Coleoptera  DNA preservation  metagenomics  museum DNA  shotgun sequencing
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号