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Rapid and synchronous chemical induction of replicative-like senescence via a small molecule inhibitor
Authors:Spiros Palikyras  Konstantinos Sofiadis  Athanasia Stavropoulou  Adi Danieli-Mackay  Vassiliki Varamogianni-Mamatsi  David Hörl  Simona Nasiscionyte  Yajie Zhu  Ioanna Papadionysiou  Antonis Papadakis  Natasa Josipovic  Anne Zirkel  Aoife O'Connell  Gary Loughran  James Keane  Audrey Michel  Wolfgang Wagner  Andreas Beyer  Hartmann Harz  Heinrich Leonhardt  Grazvydas Lukinavicius  Christoforos Nikolaou  Argyris Papantonis
Institution:1. Institute of Pathology, University Medical Center Göttingen, Göttingen, Germany;2. Institute for Bioinnovation, Biomedical Sciences Research Center “Alexander Fleming”, Vari, Greece;3. Institute of Pathology, University Medical Center Göttingen, Göttingen, Germany

Clinical Research Unit 5002, University Medical Center Göttingen, Göttingen, Germany;4. Faculty of Biology, Ludwig Maximilians University Munich, Munich, Germany;5. Cluster of Excellence on Cellular Stress Responses in Aging-Associated Diseases (CECAD), University of Cologne, Cologne, Germany;6. Center for Molecular Medicine Cologne, University and University Hospital of Cologne, Cologne, Germany;7. EIRNA Bio (formerly Ribomaps), Cork, Ireland;8. Helmholtz-Institute for Biomedical Engineering, RWTH Aachen University Medical School, Aachen, Germany;9. Department of NanoBiophotonics, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany

Abstract:Cellular senescence is acknowledged as a key contributor to organismal ageing and late-life disease. Though popular, the study of senescence in vitro can be complicated by the prolonged and asynchronous timing of cells committing to it and by its paracrine effects. To address these issues, we repurposed a small molecule inhibitor, inflachromene (ICM), to induce senescence to human primary cells. Within 6 days of treatment with ICM, senescence hallmarks, including the nuclear eviction of HMGB1 and -B2, are uniformly induced across IMR90 cell populations. By generating and comparing various high throughput datasets from ICM-induced and replicative senescence, we uncovered a high similarity of the two states. Notably though, ICM suppresses the pro-inflammatory secretome associated with senescence, thus alleviating most paracrine effects. In summary, ICM rapidly and synchronously induces a senescent-like phenotype thereby allowing the study of its core regulatory program without confounding heterogeneity.
Keywords:3D genome organization  cellular ageing  chromatin  SASP  senescence  single cell genomics
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