首页 | 本学科首页   官方微博 | 高级检索  
     


Exploring GpG bases next to anticodon in tRNA subsets
Authors:Thangavelu Srinivasan  Kubendiran Kumaran  Rajendran Selvakumar  Devadasan Velmurugan  Dorairaj Sudarsanam
Affiliation:1.DST-FIST Bioinformatics & Principal Investigator, School of Genomics, Department of Advanced Zoology and Biotechnology, Loyola College, Chennai – 600 034, Tamil Nadu, India;2.Department of Chemistry, Islamiah College, Vaniyambadi - 635752, Tamil Nadu, India;3.Bioinformatics Infrastructure Facility, CAS in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai – 600 025, Tamil Nadu, India
Abstract:Transfer RNA (tRNA) structure, modifications and functions are evolutionary and established in bacteria, archaea and eukaryotes.Typically the tRNA modifications are indispensable for its stability and are required for decoding the mRNA into amino acids forprotein synthesis. A conserved methylation has been located on the anticodon loop specifically at the 37th position and it is next tothe anticodon bases. This modification is called as m1G37 and it is catalyzed by tRNA (m1G37) methyltransferase (TrmD). It isdeciphered that G37 positions occur on few additional amino acids specific tRNA subsets in bacteria. Furthermore, Archaea andEukaryotes have more number of tRNA subsets which contains G37 position next to the anticodon and the G residue are located atdifferent positions such as G36, G37, G38, 39, and G40. In eight bacterial species, G (guanosine) residues are presents at the 37th and38th position except three tRNA subsets having G residues at 36th and 39th positions. Therefore we propose that m1G37 modificationmay be feasible at 36th, 37th, 38th, 39th and 40th positions next to the anticodon of tRNAs. Collectively, methylation at G residuesclose to the anticodon may be possible at different positions and without restriction of anticodon 3rd base A, C, U or G.
Keywords:tRNAs   Codon   Anticodon   m1G modification
设为首页 | 免责声明 | 关于勤云 | 加入收藏

Copyright©北京勤云科技发展有限公司  京ICP备09084417号