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Structural elements to convert Escherichia coli alpha-xylosidase (YicI) into alpha-glucosidase
Authors:Okuyama Masayuki  Kaneko Akira  Mori Haruhide  Chiba Seiya  Kimura Atsuo
Institution:Division of Applied Bioscience, Graduate School of Agriculture, Hokkaido University, Kita-9 Nishi-9, Sapporo 060-8589, Japan.
Abstract:Escherichia coli YicI, a member of glycoside hydrolase family (GH) 31, is an alpha-xylosidase, although its amino-acid sequence displays approximately 30% identity with alpha-glucosidases. By comparing the amino-acid sequence of GH 31 enzymes and through structural comparison of the (beta/alpha)(8) barrels of GH 27 and GH 31 enzymes, the amino acids Phe277, Cys307, Phe308, Trp345, Lys414, and beta-->alpha loop 1 of (beta/alpha)(8) barrel of YicI have been identified as elements that might be important for YicI substrate specificity. In attempt to convert YicI into an alpha-glucosidase these elements have been targeted by site-directed mutagenesis. Two mutated YicI, short loop1-enzyme and C307I/F308D, showed higher alpha-glucosidase activity than wild-type YicI. C307I/F308D, which lost alpha-xylosidase activity, was converted into alpha-glucosidase.
Keywords:GH  glycoside hydrolase family  pNP  p-nitrophenyl  PCR  polymerase chain reaction  L1Chi  chimeric YicI constructed by replacement of loop 1 with that of α-glucosidase  RGAL  rice α-galactosidase  5FXyl  5-fluoroxylosyl residue
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