A novel common triplet profile for GC-rich prokaryotic genomes |
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Authors: | Zhang Shang-Hong Wang Lei |
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Affiliation: | a The Key Laboratory of Gene Engineering of Ministry of Education, and Biotechnology Research Center, Sun Yat-sen University, Guangzhou 510275, PR China |
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Abstract: | It has been reported that there is a majority triplet profile among genomes, which was considered as a reflection of general mechanisms of genome evolution (Albrecht-Buehler, 2007). However, there are actually, according to our further analysis and at least among prokaryotic genomes, two common triplet profiles: one is from low-GC content genomes; the other is from high-GC content genomes. Both common profiles would be direct reflections of GC content variations and strand symmetry of genomic sequences. |
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Keywords: | Genomic sequence Triplet profile GC content Strand symmetry |
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