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A novel common triplet profile for GC-rich prokaryotic genomes
Authors:Zhang Shang-Hong  Wang Lei
Affiliation:a The Key Laboratory of Gene Engineering of Ministry of Education, and Biotechnology Research Center, Sun Yat-sen University, Guangzhou 510275, PR China
Abstract:It has been reported that there is a majority triplet profile among genomes, which was considered as a reflection of general mechanisms of genome evolution (Albrecht-Buehler, 2007). However, there are actually, according to our further analysis and at least among prokaryotic genomes, two common triplet profiles: one is from low-GC content genomes; the other is from high-GC content genomes. Both common profiles would be direct reflections of GC content variations and strand symmetry of genomic sequences.
Keywords:Genomic sequence   Triplet profile   GC content   Strand symmetry
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