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Bayesian Nonparametric Estimation of the Probability of Discovering New Species
Authors:Lijoi  Antonio; Mena  Ramses H; Prunster  Igor
Institution:Dipartimento di Economia Politica e Metodi Quantitativi, Università degli Studi di Pavia, 27100 Pavia, Italy lijoi{at}unipv.it
Abstract:We consider the problem of evaluating the probability of discoveringa certain number of new species in a new sample of populationunits, conditional on the number of species recorded in a basicsample. We use a Bayesian nonparametric approach. The differentspecies proportions are assumed to be random and the observationsfrom the population exchangeable. We provide a Bayesian estimator,under quadratic loss, for the probability of discovering newspecies which can be compared with well-known frequentist estimators.The results we obtain are illustrated through a numerical exampleand an application to a genomic dataset concerning the discoveryof new genes by sequencing additional single-read sequencesof cdna fragments.
Keywords:Bayesian nonparametrics  Gibbs-type random partition  Posterior probability of discovering a new species  Sample coverage  Species sampling
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