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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21)
Authors:Chang Yun-Juan  Land Miriam  Hauser Loren  Chertkov Olga  Del Rio Tijana Glavina  Nolan Matt  Copeland Alex  Tice Hope  Cheng Jan-Fang  Lucas Susan  Han Cliff  Goodwin Lynne  Pitluck Sam  Ivanova Natalia  Ovchinikova Galina  Pati Amrita  Chen Amy  Palaniappan Krishna  Mavromatis Konstantinos  Liolios Konstantinos  Brettin Thomas  Fiebig Anne  Rohde Manfred  Abt Birte  Göker Markus  Detter John C  Woyke Tanja  Bristow James  Eisen Jonathan A  Markowitz Victor  Hugenholtz Philip  Kyrpides Nikos C  Klenk Hans-Peter  Lapidus Alla
Abstract:Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
Keywords:aerobic  heterotrophic  filamentous  non-motile  Gram-positive  moderately acidophilic  sporulating  transposon  broken-stick distribution  entropy  Ktedonobacteraceae  Chloroflexi  GEBA
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