Biases of the estimates of DNA divergence obtained by the restriction enzyme technique |
| |
Authors: | Fumio Tajima Masatoshi Nei |
| |
Affiliation: | (1) Center for Demographic and Population Genetics, University of Texas at Houston, P.O. Box 20334, 77025 Houston, Texas, USA |
| |
Abstract: | Summary A mathematical formula for the relationship between the average number of nucleotide substitutions per site and the proportion of shared restriction sites between two homologous nucleons is developed by taking into account the unequal rates of substitution among different pairs of nucleotides. Using this formula, the possible amount of bias of the estimate of the number of nucleotide substitutions obtained by the Upholt-Nei-Li formula for restriction site data is investigated. The results obtained indicate that the bias depends upon the nucleotides in the recognition sequence of the restriction enzyme used, the unequal rates of substitution among different nucleotides, and the unequal nucleotide frequencies, but the primary factor is the unequal rates of nucleotide substitution. The amount of bias is generally larger for four-base enzymes than for six-base enzymes. However, when many restriction enzymes are used for the study of DNA divergence, the bias is unlikely to be very large unless the rate of substitution greatly varies from nucleotide to nucleotide. |
| |
Keywords: | Nucleotide substitution Unequal rates Restriction-site homology |
本文献已被 SpringerLink 等数据库收录! |
|