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Decapping Scavenger (DcpS) enzyme: Advances in its structure,activity and roles in the cap-dependent mRNA metabolism
Authors:Adina L Milac  Elzbieta Bojarska  Anna Wypijewska del Nogal
Institution:1. Department of Bioinformatics and Structural Biochemistry, Institute of Biochemistry of the Romanian Academy (IBAR), Splaiul Independentei 296, 060031, Bucharest 17, Romania;2. Division of Biophysics, Institute of Experimental Physics, Faculty of Physics, University of Warsaw, Zwirki & Wigury 93, 02-089 Warsaw, Poland
Abstract:Decapping Scavenger (DcpS) enzyme rids eukaryotic cells of short mRNA fragments containing the 5′ mRNA cap structure, which appear in the 3′ → 5′ mRNA decay pathway, following deadenylation and exosome-mediated turnover. The unique structural properties of the cap, which consists of 7-methylguanosine attached to the first transcribed nucleoside by a triphosphate chain (m7GpppN), guarantee its resistance to non-specific exonucleases. DcpS enzymes are dimers belonging to the Histidine Triad (HIT) superfamily of pyrophosphatases. The specific hydrolysis of m7GpppN by DcpS yields m7GMP and NDP. By precluding inhibition of other cap-binding proteins by short m7GpppN-containing mRNA fragments, DcpS plays an important role in the cap-dependent mRNA metabolism. Over the past decade, lots of new structural, biochemical and biophysical data on DcpS has accumulated. We attempt to integrate these results, referring to DcpS enzymes from different species. Such a synergistic characteristic of the DcpS structure and activity might be useful for better understanding of the DcpS catalytic mechanism, its regulatory role in gene expression, as well as for designing DcpS inhibitors of potential therapeutic application, e.g. in spinal muscular atrophy.
Keywords:Aptx  APraTaXin  ARCA  Anti-Reverse Cap Analog  A  suum  Ascaris suum  CBC  Cap-Binding Complex  C  elegans  Caenorhabditis elegans  Dcp2  Decapping protein 2  DcpS  Decapping Scavenger  eIF4E  eukaryotic translation Initiation Factor 4E  Fhit  Fragile HIstidine Triad  Fre1  C  elegans Flavin Reductase 1  GalT  GALactose-1-P uridylylTransferase  Hint  HIstidine triad NucleoTide-binding  HIT  Histidine Triad  m7GDP  7-methylguanosine diphosphate  m7GMP  7-methylguanosine monophosphate  m7GTP  7-methylguanosine triphosphate  m7Guo  7-methylguanosine  miRNA  microRNA  NES  Nuclear Export Sequence  NLS  Nuclear Localization Signal  NR1  human Novel Reductase 1  Nth1  neutral trehalase 1  PDB  Protein Data Bank  Por1  mitochondrial porin 1  RNAi  RNA interference  S  cerevisiae  Saccharomyces cerevisiae  SMA  Spinal Muscular Atrophy  SMN  Survival Motor Neuron  VMD  Visual Molecular Dynamics
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