MOFOID--not only the protein modeling server |
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Authors: | Szczesny Pawel Wieczorek Grzegorz Zielenkiewicz Piotr |
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Affiliation: | Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warszawa, Poland. |
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Abstract: | MOFOID is a new server developed mainly for automated modeling of protein structures by their homology to the structures deposited in the PDB database. Selection of a template and calculation of the alignment is performed with the Smith-Waterman or Needleman-Wunsch algorithms implemented in the EMBOSS package. The final model is built and optimised with programs from the JACKAL package. The wide spectrum of options in the web-based interface and the possibility of uploading user's own alignment make MOFOID a suitable platform for testing new approaches in the alignment building. The server is available at https:// valis.ibb.waw.pl/mofoid/. |
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