海绵Pachychalina sp．体内古菌多样性非培养技术分析

采用非分离培养分析方法 ,即 16SrDNA限制性酶切片段长度多态性 (ARDRA)和测序方法对南海湛江海域海绵Pachychalinasp .体内的古菌多样性进行了研究。从海绵体内直接提取古菌总DNA。以样品总DNA为模板 ,用古菌 16SrDNA通用引物进行PCR扩增获得 16SrDNA ,回收、纯化 16SrDNA产物并克隆到T Vector。进行第二次PCR扩增反应 ,且对扩增产物进行ARDRA。在古菌 16SrDNA的ARDRA图谱中 ,大多数克隆的酶切带谱上存在差异 ;随机挑选 8个克隆子进行测序 ,获得古菌 16SrDNA的部分序列 ,并对 16SrDNA序列进行聚类分析构建了系统进化树 ,结果发现海绵体内的古菌主要属于Methanogeniumorganophilum、Methanoplanuspetrolearius等古菌类。但它们与目前数据库中收录的古细菌间的相似性均不超过 90 % ,它们极有可能是一些新的古菌

Archaeal diversity associated with sponge Pachychalina sp. analyzed by culture-independent approach

With culture-independent approach, microbial total DNA was directly extracted from Pachychalina sp. Using the total microbial DNA as template, archaeal 16S rDNAs were amplified by PCR with universal primers. Amplified products were cloned into T-vector and secondarily amplified by PCR. Then the secondarily amplified products were purified to be further characterized by termed ARDRA(amplified rDNA restriction analysis,ARDRA). According to the enzyme restriction mapping, the apparent difference among them were disclosed. Further more eight archaeal cloned partial sequences were acquired and builded up a phylogenetic tree. In the phylogenetic tree, the eight archaea belonged to Methanogenium organophilum and Methanoplanus petrolearius, but the 16S rDNAs similarities among them and those archaea registered in RDP Database didn't excess to 90%. It means that they maybe represent some novel archaeal groups.