Detecting bottlenecks using BOTTLENECK 1.2.02 in wild populations: the importance of the microsatellite structure |
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Authors: | Romane Cristescu William Bruce Sherwin Kathrine Handasyde Valma Cahill Desmond W Cooper |
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Institution: | (1) Evolution and Ecology Research Centre, School of Biological, Earth and Environmental Sciences, University of New South Wales, Kensington, NSW, 2052, Australia;(2) Department of Zoology, University of Melbourne, Melbourne, VIC, 3010, Australia;(3) Dubbo College, Delroy Campus, East Str, Dubbo, NSW, 2830, Australia |
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Abstract: | Reduced, or bottlenecked, populations are more prone to adverse events. Thus, the detection of genetic bottleneck signatures
in wildlife is an important issue for conservation. BOTTLENECK 1.2.02 is a software commonly used for detecting genetic characteristics
of past bottlenecks. Here we test the efficiency with which this software detects bottlenecks in two koala populations of
known history. The sign test performed well for both populations, particularly under the infinite alleles model for mutation.
This suggests this model could be the more realistic for marsupial microsatellites than other mutation models. Under the allele
frequency distribution test, the two populations falsely appeared to be at mutation/drift equilibrium. However, this test
could detect the bottleneck when only imperfect repeat microsatellites were included in the analysis. We thus recommend further
investigation of imperfect repeat microsatellites, which could be more powerful for bottleneck detection. These results underline
the cautious approach researchers and conservationists should take when studying the past of unknown populations. |
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