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Identification of astigmatid mites using the second internal transcribed spacer (ITS2) region and its application for phylogenetic study
Authors:Koji Noge  Naoki Mori  Chihiro Tanaka  Ritsuo Nishida  Mitsuya Tsuda  Yasumasa Kuwahara
Institution:(1) Laboratory of Chemical Ecology, Division of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, 606-8502 Sakyo-ku, Kyoto, Japan;(2) Laboratory of Environmental Mycoscience, Division of Environmental Science and Technology, Graduate School of Agriculture, Kyoto University, Sakyo-ku, Kyoto Japan, 606-8502
Abstract:The second internal transcribed spacer (ITS2) of nuclear ribosomal DNA from 73 specimens of Astigmata was analyzed by PCR amplification and DNA sequencing. The length of the ITS2 region varied from 282 to 592 bp. The interspecific variation based on consensus sequences was more than 4.1%, while the intraspecific or intra-individual variation was from 0 to 5.7%. The variation between geographically separated populations (0–3.2%) was almost the same as the variation within strains. The sequences of the ITS2 region of Astigmata were concluded to be species-specific. The phylogenetic tree inferred from the ITS2 region supported Zachvatkinrsquos morphological classification in the subfamily Rhizoglyphinae. The species-specific ITS2 sequence is useful for the species identification of astigmatid mites and for studying low-level phylogenetic relationships.Chemical Ecology of Astigmatid Mites LXXVThis revised version was published online in May 2005 with a corrected cover date.
Keywords:Astigmata  Astigmatid mites  Identification of species  ITS2  Molecular phylogeny  Taxonomy
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