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Validation of prostate cancer risk-related loci identified from genome-wide association studies using family-based association analysis: evidence from the International Consortium for Prostate Cancer Genetics (ICPCG)
Authors:Guangfu Jin  Lingyi Lu  Kathleen A Cooney  Anna M Ray  Kimberly A Zuhlke  Ethan M Lange  Lisa A Cannon-Albright  Nicola J Camp  Craig C Teerlink  Liesel M FitzGerald  Janet L Stanford  Kathleen E Wiley  Sarah D Isaacs  Patrick C Walsh  William D Foulkes  Graham G Giles  John L Hopper  Gianluca Severi  Ros Eeles  Doug Easton  Zsofia Kote-Jarai  Michelle Guy  Antje Rinckleb  Christiane Maier  Walther Vogel  Geraldine Cancel-Tassin  Christophe Egrot  Olivier Cussenot  Stephen N Thibodeau  Shannon K McDonnell  Daniel J Schaid  Fredrik Wiklund  Henrik Gr?nberg  Monica Emanuelsson  Alice S Whittemore  Ingrid Oakley-Girvan  Chih-Lin Hsieh  Tiina Wahlfors  Teuvo Tammela  Johanna Schleutker  William J Catalona  S Lilly Zheng  Elaine A Ostrander  William B Isaacs  Jianfeng Xu
Institution:Data Coordinating Center for the ICPCG and Center for Cancer Genomics, Wake Forest University School of Medicine, Winston-Salem, NC 27157, USA.
Abstract:Multiple prostate cancer (PCa) risk-related loci have been discovered by genome-wide association studies (GWAS) based on case-control designs. However, GWAS findings may be confounded by population stratification if cases and controls are inadvertently drawn from different genetic backgrounds. In addition, since these loci were identified in cases with predominantly sporadic disease, little is known about their relationships with hereditary prostate cancer (HPC). The association between seventeen reported PCa susceptibility loci was evaluated with a family-based association test using 1,979 hereditary PCa families of European descent collected by members of the International Consortium for Prostate Cancer Genetics, with a total of 5,730 affected men. The risk alleles for 8 of the 17 loci were significantly over-transmitted from parents to affected offspring, including SNPs residing in 8q24 (regions 1, 2 and 3), 10q11, 11q13, 17q12 (region 1), 17q24 and Xp11. In subgroup analyses, three loci, at 8q24 (regions 1 and 2) plus 17q12, were significantly over-transmitted in hereditary PCa families with five or more affected members, while loci at 3p12, 8q24 (region 2), 11q13, 17q12 (region 1), 17q24 and Xp11 were significantly over-transmitted in HPC families with an average age of diagnosis at 65?years or less. Our results indicate that at least a subset of PCa risk-related loci identified by case-control GWAS are also associated with disease risk in HPC families.
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