A naturally occurring point mutation in the 13-mer R repeat affects the <Emphasis Type="Italic">oriC</Emphasis> function of the large chromosome of <Emphasis Type="Italic">Vibrio cholerae</Emphasis> O1 classical biotype

The genome of Vibrio cholerae consists of two circular chromosomes of different sizes. Here, a comparative analysis of the replication origins of the large chromosomes (oriCI_VC) of classical and El Tor biotypes of the pathogen is reported. Extensive nucleotide sequence analyses revealed that the oriCI_VC region has six DnaA boxes instead of the five found in Escherichia coli oriC. The additional DnaA box, designated R_V, was unique in V. cholerae as well as in other members of the family Vibrionaceae. However, R_V was not found to be essential for the autonomous replication function of the 307-bp oriCI_VC minimal region. In contrast to El Tor and the recently evolved V. cholerae O139 strains, the oriCI_VC region of the classical biotype showed only a single base transition (TG) in a highly conserved AT-rich 13-mer R repeat region. From the minichromosome copy number and its transformational efficiency analyses, it appears that the single base substitution in the oriCI_VC of the classical biotype has a significant effect on its replication initiation.