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siRNA pro 2.0:siRNA理性设计在线程序
引用本文:方翔,杜正平,曹以诚,郭旭,刘鹏飞,董守斌.siRNA pro 2.0:siRNA理性设计在线程序[J].中国生物化学与分子生物学报,2007,23(9):751-756.
作者姓名:方翔  杜正平  曹以诚  郭旭  刘鹏飞  董守斌
作者单位:1. 华南理工大学生物科学与工程学院,广州,510640
2. 华南理工大学信息网络研究工程中心,广州,510640
基金项目:国家自然科学基金;教育部中国网格计划生物信息网格平台子项目;广州市科技局siRNA科技攻关重大项目
摘    要:siRNA作为基因功能研究和临床治疗的重要工具,已经引起了科学界的广泛关注,世界上许多学术和商业机构也开发了相应的siRNA设计程序.近年来,随着对siRNA机制研究的不断深入,尤其是2004年Reynolds提出siRNA理性设计规则之后,许多新的理论极大地推动了siRNA设计程序的发展.本文根据2003至2006年以来对siRNA机制的研究进展,在原有的设计程序siRNA pro的基础上进行了更新并推出了2.0版,为siRNA作用机制的研究和siRNA相关产品的开发提供更优质的理性设计服务.

关 键 词:siRNA  理性设计  热动力学  可接近性  特异性  
收稿时间:2007-3-28
修稿时间:2007年3月28日

siRNA pro 2.0:An Online Tool for Rational Design of siRNA
FANG Xiang,DU Zheng-Ping,CAO Yi-Cheng,GUO Xu,LIU Peng-Fei,DONG Shou-Bin.siRNA pro 2.0:An Online Tool for Rational Design of siRNA[J].Chinese Journal of Biochemistry and Molecular Biology,2007,23(9):751-756.
Authors:FANG Xiang  DU Zheng-Ping  CAO Yi-Cheng  GUO Xu  LIU Peng-Fei  DONG Shou-Bin
Institution:1)School of Bioscience and Bioengineering,South China University of Technology, Guangzhou 510640,China;  2)Network Engineering and Research Center, South China University of Technology, Guangzhou 510640,China
Abstract:As an important tool of gene function studies and clinical therapy,siRNA has drawn extensive attentions in the biomedical research fields.After the discovery of RNA interference phenomenon in 1998,numerous researchers have closely investigated the mechanism of siRNA and attempted to formulate the rules for siRNA designs which have already been adopted in many siRNA designing programs.The outcome of siRNA design has been dramatically improved by the rational siRNA design rules summarized by Reynolds,et al.since 2004.The Bioinformatics Centre of South China University of Technology has built a siRNA designing system "siRNA pro" in 2003.Currently,to provide better services for the siRNA-related researches,an update of this program which is based on the latest developments of the designing rules is urgently demanded.siRNA pro 2.0,which has combined and taken advantages of the basic empirical rules,the rational design rules,the target mRNA accessibility rules the siRNA duplex thermodynamics rules,and the siRNA specificity rules,will ultimately help investigators to obtain highly effective and specific siRNA designs.
Keywords:siRNA
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