Zerg: a very fast BLAST parser library |
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| Authors: | Paquola Apuã C M Machado Abimael A Reis Eduardo M Da Silva Aline M Verjovski-Almeida Sergio |
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| Institution: | Departamento de Bioquímica, Instituto de Química, Universidade de S?o Paulo 05508-900, S?o Paulo, SP, Brazil. verjo@iq.usp.br |
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| Abstract: | Summary: Zerg is a library of sub-routines that parses the output from all NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx) and returns the attributes of a BLAST report to the user. It is optimized for speed, being especially useful for large-scale genomic analysis. Benchmark tests show that Zerg is over two orders of magnitude faster than some widely used BLAST parsers. AVAILABILITY: http://bioinfo.iq.usp.br/zerg |
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