Genetic evidence for divergent selection on Oenanthe conioides and Oe. aquatica (Apiaceae), a candidate case for sympatric speciation

The opportunity for habitat shift in sympatry is thought to be an important factor in sympatric speciation by facilitating assortative mating and offering opportunities for divergent selection. Oenanthe conioides (Apiaceae) is a narrow endemic from the lower Elbe river area (Germany) where it is restricted to areas experiencing fresh water tides inundating the plants twice a day. The species was shown to have originated from Oe. aquatica which is widely distributed in Europe and grows in still or slowly flowing fresh water. Reciprocal transplant experiments have previously shown that in both habitats the non‐native species is less fit than the native, and several phenotypic traits have been linked to this difference in fitness. We performed an amplified fragment length polymorphism genome scan with 333 polymorphic markers searching for candidate markers for divergent selection. A relatively small fraction (2.1%) of the markers was identified as divergence outliers which fits theoretical expectations for speciation with gene flow. Some of the markers that were potentially under divergent selection showed evidence of being clustered in the genome. This suggests that there may have been a role for mechanisms that reduce breaking‐up of trait complexes in the speciation process. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 50–56.