Direct and selective small-molecule inhibition of photosynthetic PEP carboxylase: New approach to combat C4 weeds in arable crops

Phosphoenolpyruvate carboxylase (PEPC) is a key enzyme of C₄ photosynthesis. Besides, non-photosynthetic isoforms of PEPC are found in bacteria and all types of plants, although not in animals or fungi. A single residue in the allosteric feedback inhibitor site of PEPC was shown to adjust the affinity of the photosynthetic and non-photosynthetic isoforms for feedback inhibition by metabolites of the C₄ pathway. Here, we applied computational screening and biochemical analyses to identify molecules that selectively inhibit C₄ PEPC, but have no effect on the activity of non-photosynthetic PEPCs. We found two types of selective inhibitors, catechins and quinoxalines. Binding constants in the lower μM range and a strong preference for C₄ PEPC qualify the quinoxaline compounds as potential selective herbicides to combat C₄ weeds.