Data Deposition and Annotation at the Worldwide Protein Data Bank |
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| Authors: | Shuchismita Dutta Kyle Burkhardt Jasmine Young Ganesh J Swaminathan Takanori Matsuura Kim Henrick Haruki Nakamura Helen M Berman |
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| Institution: | (1) Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, 610 Taylor Road, Piscataway, NJ 08854-8087, USA;(2) Present address: Office of Research and Project Administration, Princeton University, 4 New South Building, Princeton, NJ 08544, USA;(3) The Macromolecular Structure Database at the European Bioinformatics Institute PDB-e, EMBL Outstation-Hinxton, Cambridge, CB10 1SD, UK;(4) Protein Data Bank Japan (PDBj), Institute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita Osaka, 565-0871, Japan; |
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| Abstract: | The Protein Data Bank (PDB) is the repository for three-dimensional structures of biological macromolecules, determined by
experimental methods. The data in the archive is free and easily available via the Internet from any of the worldwide centers
managing this global archive. These data are used by scientists, researchers, bioinformatics specialists, educators, students,
and general audiences to understand biological phenomenon at a molecular level. Analysis of this structural data also inspires
and facilitates new discoveries in science. This chapter describes the tools and methods currently used for deposition, processing,
and release of data in the PDB. References to future enhancements are also included.
Shuchismita Dutta, Kyle Burkhardt, and Ganesh J. Swaminathan have contributed equally to this work. |
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| Keywords: | Protein Data Bank (PDB) wwPDB Deposition Annotation Validation |
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