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Crystal structure of a transfer‐ribonucleoprotein particle that promotes asparagine formation
Authors:Mickaël Blaise  Marc Bailly  Mathieu Frechin  Manja Annette Behrens  Frédéric Fischer  Hubert Dominique Becker  Jan Skov Pedersen  Søren Thirup  Daniel Kern
Affiliation:1.Department of Molecular Biology, CARB Centre, University of Aarhus, Århus C, Denmark;2.Institut de Biologie Moléculaire et Cellulaire, UPR 9002 du CNRS, Architecture et Réactivité de l''ARN, Université de Strasbourg, Strasbourg, Cedex, France;3.Department of Chemistry, iNANO Interdisciplinary Nanoscience Center, University of Aarhus, Århus C, Denmark
Abstract:Four out of the 22 aminoacyl‐tRNAs (aa‐tRNAs) are systematically or alternatively synthesized by an indirect, two‐step route requiring an initial mischarging of the tRNA followed by tRNA‐dependent conversion of the non‐cognate amino acid. During tRNA‐dependent asparagine formation, tRNAAsn promotes assembly of a ribonucleoprotein particle called transamidosome that allows channelling of the aa‐tRNA from non‐discriminating aspartyl‐tRNA synthetase active site to the GatCAB amidotransferase site. The crystal structure of the Thermus thermophilus transamidosome determined at 3 Å resolution reveals a particle formed by two GatCABs, two dimeric ND‐AspRSs and four tRNAsAsn molecules. In the complex, only two tRNAs are bound in a functional state, whereas the two other ones act as an RNA scaffold enabling release of the asparaginyl‐tRNAAsn without dissociation of the complex. We propose that the crystal structure represents a transient state of the transamidation reaction. The transamidosome constitutes a transfer‐ribonucleoprotein particle in which tRNAs serve the function of both substrate and structural foundation for a large molecular machine.
Keywords:crystal structure  indirect tRNA asparaginylation  transamidosome  transfer‐ribonucleoprotein particle  tRNA scaffold
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