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Measurement of proton relaxation rates in proteins
Authors:Benoit Boulat  Geoffrey Bodenhausen
Institution:(1) Section de Chimie, Université de Lausanne, Rue de la Barre 2, CH-1005 Lausanne, Switzerland;(2) Present address: Scripps Research Institute, 10666 North Torrey Pines Road, 92037 La Jolla, CA, USA
Abstract:Summary Five different types of experiment are described which make it possible to measure various relaxation rates of selected protons in crowded spectra of macromolecules such as proteins: longitudinal spin-lattice relaxation rates rgr=1/T1, transverse relaxation rates rgr=1/T2 measured under conditions of free precession, transverse relaxation rates rgr1 LOCK=1/T1 rgr measured under conditions of spin-locking, and transverse relaxation rates rgrDQC=1/T2 DQC and rgrZQC=1/T2 ZQC of double- and zero-quantum coherences. The surprisingly large discrepancy between the transverse rates rgrt and rgrt is discussed in detail. To separate overlapping proton signals, the experimental schemes involve one or several magnetization transfer steps, using a doubly selective homonuclear Hartmann-Hahn method. Numerous variants of the basic ideas can be conceived, depending on the extent of signal overlap and on the topology of the networks of scalar couplings. Applications are shown to Hepsi and Hdelta of Tyr23, to Hagr, Hbeta and Hbetaprime of Cys30, and to Hagr and Hbeta of Ala24 in bovine pancreatic trypsin inhibitor (BPTI).
Keywords:Proton NMR  Longitudinal relaxation rates  Transverse relaxation rates  Spin-locking  Double- and zero-quantum relaxation rates
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