ProPred: prediction of HLA-DR binding sites. |
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| Authors: | H Singh G P Raghava |
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| Affiliation: | Bioinformatics Centre, Institute of Microbial Technology, Sector 39A, Chandigarh-160036, India. |
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| Abstract: | ProPred is a graphical web tool for predicting MHC class II binding regions in antigenic protein sequences. The server implement matrix based prediction algorithm, employing amino-acid/position coefficient table deduced from literature. The predicted binders can be visualized either as peaks in graphical interface or as colored residues in HTML interface. This server might be a useful tool in locating the promiscuous binding regions that can bind to several HLA-DR alleles. AVAILABILITY: The server is available at http://www.imtech.res.in/raghava/propred/ CONTACT: raghava@imtech.res.in SUPPLEMENTARY INFORMATION: http://www.imtech.res.in/raghava/propred/page3.html |
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