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Super paramagnetic clustering of protein sequences |
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| Authors: | |
| Institution: | 1.GSF National Research Center for Environment and Health,Institute for Bioinformatics,Neuherberg,Germany;2.IBPC, Biomedical Department,Ukrainian Academy of Sciences,Kyiv,Ukraine;3.Department of Genome-Oriented Bioinformatics,Wissenschaftszentrum Weihenstephan, Technische Universit?t München,Freising,Germany |
| Abstract: | BackgroundDetection of sequence homologues represents a challenging task that is important for the discovery of protein families and the reliable application of automatic annotation methods. The presence of domains in protein families of diverse function, inhomogeneity and different sizes of protein families create considerable difficulties for the application of published clustering methods. |
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