Bacterial Ammeline Metabolism via Guanine Deaminase

Melamine toxicity in mammals has been attributed to the blockage of kidney tubules by insoluble complexes of melamine with cyanuric acid or uric acid. Bacteria metabolize melamine via three consecutive deamination reactions to generate cyanuric acid. The second deamination reaction, in which ammeline is the substrate, is common to many bacteria, but the genes and enzymes responsible have not been previously identified. Here, we combined bioinformatics and experimental data to identify guanine deaminase as the enzyme responsible for this biotransformation. The ammeline degradation phenotype was demonstrated in wild-type Escherichia coli and Pseudomonas strains, including E. coli K12 and Pseudomonas putida KT2440. Bioinformatics analysis of these and other genomes led to the hypothesis that the ammeline deaminating enzyme was guanine deaminase. An E. coli guanine deaminase deletion mutant was deficient in ammeline deaminase activity, supporting the role of guanine deaminase in this reaction. Two guanine deaminases from disparate sources (Bradyrhizobium japonicum USDA 110 and Homo sapiens) that had available X-ray structures were purified to homogeneity and shown to catalyze ammeline deamination at rates sufficient to support bacterial growth on ammeline as a sole nitrogen source. In silico models of guanine deaminase active sites showed that ammeline could bind to guanine deaminase in a similar orientation to guanine, with a favorable docking score. Other members of the amidohydrolase superfamily that are not guanine deaminases were assayed in vitro, and none had substantial ammeline deaminase activity. The present study indicated that widespread guanine deaminases have a promiscuous activity allowing them to catalyze a key reaction in the bacterial transformation of melamine to cyanuric acid and potentially contribute to the toxicity of melamine.Ammeline is an intermediate in the bacterial metabolism of melamine (Fig. ​(Fig.1).1). Melamine has become internationally recognized as a chemical adulterant in pet foods and infant formula that caused morbidity and mortality in pets and children (12). In pets, where more than 1,000 deaths have been attributed to melamine poisoning, the composition of the causal kidney precipitate was found to be a 1:1 complex of melamine-cyanuric acid (2, 25). In human babies, melamine-uric acid cocrystals have been identified (11). Feeding animals a mixture of melamine and cyanuric acid or a mixture of melamine, ammeline, ammelide, and cyanuric acid was found to produce acute kidney disease (5). Melamine and cyanuric acid are known to form a highly insoluble, hydrogen-bonded network (33) that can precipitate in the kidneys, causing kidney failure. Since bacterial metabolism of melamine generates cyanuric acid (6, 7, 14), it is possible that bacterial melamine metabolism could contribute to melamine toxicity in some cases.Open in a separate windowFIG. 1.The known metabolic pathway in bacteria for transforming melamine to cyanuric acid.Bacteria metabolize melamine by sequential deamination (4, 6, 7, 14, 30) to ammeline, ammelide, and cyanuric acid (Fig. ​(Fig.1).1). The genes and enzymes involved in the deamination of melamine and ammelide are known. Melamine deaminases (TriA and TrzA) have been purified and characterized (20, 28). The enzymes AtzC (34) and TrzC (7) were shown to be capable of ammelide deamination. Although ammeline deamination has been observed in a large number of microbial strains (37), the genes and enzymes involved in bacterial ammeline deamination have remained obscure. Many of the bacteria and fungi that were shown to deaminate ammeline did not deaminate melamine or ammelide (37), indicating that these ammeline deaminating enzymes have not evolved as a component of the melamine degradation pathway.Enzymes functioning in the metabolism of the s-triazine herbicide atrazine are related to some of the enzymes in the melamine pathway. TriA (melamine deaminase) is related to AtzA (28, 31) and TrzN (35), enzymes that catalyze the dechlorination of atrazine. AtzB, which catalyzes the second step in the atrazine metabolic pathway, was reported to also deaminate ammeline as a side reaction, but the rate of the reaction was not measured in that study (27).The enzymes involved in melamine and ammelide deamination, along with other enzymes acting on s-triazine herbicides, are all members of the amidohydrolase superfamily (32, 36). These enzymes typically contain one or two metal ions that are involved in activating water for nucleophilic displacement reactions. A significant number of amidohydrolase superfamily members catalyze deamination reactions with nitrogen heterocyclic ring substrates. In this context, we specifically analyzed the amidohydrolase enzymes in ammeline-metabolizing bacteria to identify the enzyme responsible for the activity. Molecular genetic, biochemical, and in silico data support the hypothesis that guanine deaminase functions as the principal ammeline deaminase activity of bacteria. This has implications for enzyme catalytic promiscuity and understanding the bacterial metabolism of melamine. The latter may be relevant to melamine toxicity in humans and animals.