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Mutation patterns for two flaviviruses: hepatitis C virus and GB virus C/hepatitis G virus
Authors:Masashi Mizokami  Tadashi Imanishi  Kazuho Ikeo  Yoshiyuki Suzuki  Etsuro Orito  Takashi Kumada  Ryuzo Ueda  Shiro Iino  Tatsunori Nakano
Institution:Second Department of Medicine, Nagoya City University Medical School, Nagoya, Japan. mizokami@med.nagoya-cu.ac.jp
Abstract:We studied the mutation patterns of hepatitis C virus (HCV) and GB virus C/hepatitis G virus (HGV). Although the mutation patterns of the two viruses were similar to each other, they were quite different from that of HIV. In particular, the similarity of the patterns between HCV or HGV and human nuclear pseudogenes was statistically significant whereas there was no similarity between HIV and human nuclear pseudogenes. This finding suggests that the mutation patterns of HCV and HGV are similar to the patterns of spontaneous substitution mutations of human genes, implying that nucleotide analogues which are effective against HCV and HGV may have a side effect on the normal cells of humans.
Keywords:Mutation pattern  Relative substitution frequency  Phylogenetic tree  Hepatitis C virus  GB virus C/hepatitis G virus
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